Index

A

AdaptiveNCC (class in icon_registration.losses) adjust_batch_size() (icon_registration.network_wrappers.RegistrationModule method) (in module icon_registration.network_wrappers) all_loss (icon_registration.losses.BendingLoss attribute) (icon_registration.losses.ICONLoss attribute)

as_function() (icon_registration.network_wrappers.RegistrationModule method) assign_identity_map() (icon_registration.network_wrappers.RegistrationModule method) assignIdentityMap() (in module icon_registration.network_wrappers) Autoencoder (class in icon_registration.networks)

B

bending_energy_loss (icon_registration.losses.BendingLoss attribute) BendingEnergyNet (class in icon_registration.losses) BendingLoss (class in icon_registration.losses) blur() (icon_registration.losses.AdaptiveNCC method) (icon_registration.losses.BlurredSSD method) (icon_registration.losses.LNCC method) (icon_registration.losses.LNCCOnlyInterpolated method)

BlurredSSD (class in icon_registration.losses) brain_network_preprocess() (in module icon_registration.pretrained_models.HCP_brain) brain_registration_model() (in module icon_registration.pretrained_models.HCP_brain)

C

calculate_lncc() (icon_registration.losses.LNCC method) compute_bending_energy_loss() (icon_registration.losses.BendingEnergyNet method) (icon_registration.losses.DiffusionRegularizedNet method) compute_gradient_icon_loss() (icon_registration.losses.GradientICON method) compute_mindssc() (icon_registration.losses.MINDSSC method)

compute_similarity_measure() (icon_registration.losses.BendingEnergyNet method) (icon_registration.losses.GradientICON method) ConcatInputs (class in icon_registration.monai_wrapper) ConvNet (class in icon_registration.networks) ConvolutionalMatrixNet (class in icon_registration.networks) create_itk_transform() (in module icon_registration.itk_wrapper)

D

DenseMatrixNet (class in icon_registration.networks) DiffusionRegularizedNet (class in icon_registration.losses) DoubleNet (in module icon_registration.network_wrappers)

download_test_data() (in module icon_registration.test_utils) DownsampleNet (in module icon_registration.network_wrappers) DownsampleRegistration (class in icon_registration.network_wrappers)

F

FCNet (class in icon_registration.networks) FCNet1D (class in icon_registration.networks) FCNet3D (class in icon_registration.networks) finetune_execute() (in module icon_registration.itk_wrapper) finetune_execute_mask() (in module icon_registration.itk_wrapper) FirstChannelInputs (class in icon_registration.monai_wrapper) flips (icon_registration.losses.BendingLoss attribute) (icon_registration.losses.ICONLoss attribute) flips() (in module icon_registration.losses) forward() (icon_registration.losses.BendingEnergyNet method) (icon_registration.losses.GradientICON method) (icon_registration.losses.GradientICONSparse method) (icon_registration.losses.InverseConsistentNet method) (icon_registration.monai_wrapper.ConcatInputs method) (icon_registration.monai_wrapper.FirstChannelInputs method) (icon_registration.network_wrappers.DownsampleRegistration method) (icon_registration.network_wrappers.FunctionFromMatrix method) (icon_registration.network_wrappers.FunctionFromVectorField method) (icon_registration.network_wrappers.RandomShift method) (icon_registration.network_wrappers.RegistrationModule method) (icon_registration.network_wrappers.SquaringVelocityField method) (icon_registration.network_wrappers.TwoStepRegistration method) (icon_registration.networks.Autoencoder method) (icon_registration.networks.ConvNet method) (icon_registration.networks.ConvolutionalMatrixNet method) (icon_registration.networks.DenseMatrixNet method) (icon_registration.networks.FCNet method) (icon_registration.networks.FCNet1D method) (icon_registration.networks.FCNet3D method) (icon_registration.networks.RegisNet method) (icon_registration.networks.Residual method) (icon_registration.networks.StumpyConvolutionalMatrixNet method) (icon_registration.networks.UNet method) (icon_registration.networks.UNet2 method) (icon_registration.networks.UNet2ChunkyMiddle method) (icon_registration.networks.UNet3 method)

FunctionFromMatrix (class in icon_registration.network_wrappers) FunctionFromVectorField (class in icon_registration.network_wrappers)

G

gaussian_blur() (in module icon_registration.losses) get_cartilage_dataset() (in module icon_registration.data) get_copdgene_dataset() (in module icon_registration.data) get_dataset_1d() (in module icon_registration.data) get_dataset_mnist() (in module icon_registration.data) get_dataset_retina() (in module icon_registration.data)

get_dataset_sunnyside() (in module icon_registration.data) get_dataset_triangles() (in module icon_registration.data) get_knees_dataset() (in module icon_registration.data) get_learn2reg_AbdomenCTCT_dataset() (in module icon_registration.data) get_learn2reg_lungCT_dataset() (in module icon_registration.data) GradientICON (class in icon_registration.losses) GradientICONSparse (class in icon_registration.losses)

I

icon_registration.data module icon_registration.itk_wrapper module icon_registration.losses module icon_registration.monai_wrapper module icon_registration.network_wrappers module icon_registration.networks module icon_registration.pretrained_models.HCP_brain module

icon_registration.pretrained_models.lung_ct module icon_registration.pretrained_models.OAI_knees module icon_registration.test_utils module icon_registration.train module icon_registration.visualize module ICONLoss (class in icon_registration.losses) init_network() (in module icon_registration.pretrained_models.lung_ct) inverse_consistency_loss (icon_registration.losses.ICONLoss attribute) InverseConsistentNet (class in icon_registration.losses)

L

LNCC (class in icon_registration.losses) LNCCOnlyInterpolated (class in icon_registration.losses)

lung_network_preprocess() (in module icon_registration.pretrained_models.lung_ct) LungCT_registration_model() (in module icon_registration.pretrained_models.lung_ct)

M

make_batch() (in module icon_registration.data) make_ddf_from_icon_transform() (in module icon_registration.monai_wrapper) make_ddf_using_icon_module() (in module icon_registration.monai_wrapper) make_network() (in module icon_registration.pretrained_models.lung_ct) MINDSSC (class in icon_registration.losses) module icon_registration.data icon_registration.itk_wrapper icon_registration.losses icon_registration.monai_wrapper icon_registration.network_wrappers icon_registration.networks icon_registration.pretrained_models.HCP_brain icon_registration.pretrained_models.lung_ct icon_registration.pretrained_models.OAI_knees icon_registration.test_utils icon_registration.train icon_registration.visualize

multiply_matrix_vectorfield() (in module icon_registration.network_wrappers)

N

NCC (class in icon_registration.losses)

normalize() (in module icon_registration.losses)

O

OAI_knees_gradICON_model() (in module icon_registration.pretrained_models.OAI_knees)

OAI_knees_registration_model() (in module icon_registration.pretrained_models.OAI_knees)

P

pad_or_crop() (in module icon_registration.networks)

pdist_squared() (icon_registration.losses.MINDSSC method) prepare_for_viz() (icon_registration.losses.BendingEnergyNet method)

R

RandomShift (class in icon_registration.network_wrappers) read_copd_pointset() (in module icon_registration.test_utils) RegisNet (class in icon_registration.networks) register_pair() (in module icon_registration.itk_wrapper)

register_pair_with_mask() (in module icon_registration.itk_wrapper) register_pair_with_multimodalities() (in module icon_registration.itk_wrapper) RegistrationModule (class in icon_registration.network_wrappers) resampling_transform() (in module icon_registration.itk_wrapper) Residual (class in icon_registration.networks)

S

show_as_grid() (in module icon_registration.visualize) similarity_loss (icon_registration.losses.BendingLoss attribute) (icon_registration.losses.ICONLoss attribute) SimilarityBase (class in icon_registration.losses) spin_augment() (in module icon_registration.data)

SquaredLNCC (class in icon_registration.losses) SquaringVelocityField (class in icon_registration.network_wrappers) SSD (class in icon_registration.losses) SSDOnlyInterpolated (class in icon_registration.losses) StumpyConvolutionalMatrixNet (class in icon_registration.networks)

T

tallAE() (in module icon_registration.networks) tallerUNet2() (in module icon_registration.networks) tallishUNet2() (in module icon_registration.networks) tallUNet() (in module icon_registration.networks) tallUNet2() (in module icon_registration.networks) tallUNet3() (in module icon_registration.networks)

to_floats() (in module icon_registration.losses) train2d() (in module icon_registration.train) train_batchfunction() (in module icon_registration.train) train_datasets() (in module icon_registration.train) transform_magnitude (icon_registration.losses.BendingLoss attribute) (icon_registration.losses.ICONLoss attribute) TwoStepRegistration (class in icon_registration.network_wrappers)

U

UNet (class in icon_registration.networks) UNet2 (class in icon_registration.networks)

UNet2ChunkyMiddle (class in icon_registration.networks) UNet3 (class in icon_registration.networks)

V

visualizeRegistration() (in module icon_registration.visualize)

visualizeRegistrationCompact() (in module icon_registration.visualize)

W

warninfo() (in module icon_registration.network_wrappers)

write_stats() (in module icon_registration.train)